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Endometriosis and Autoimmune Disease: Understanding the Link

How immune dysregulation connects endometriosis with autoimmune diseases—what the science shows, comorbid risks, and implications for diagnosis and care.

By Dr Steven Vasilev
Point-of-view vector scene of a woman in a clinic as a clinician points to a Venn-style display linking immune cells with endometriosis, suggesting autoimmune comorbidity.

Unraveling the Connection Between Endometriosis and Autoimmune Diseases


Endometriosis causes pain, multiple bowel symptoms, and infertility, among many other debilitating symptoms, and affects about 10% of women, mostly in the reproductive age range. Developing research has indicated a link between endometriosis and various autoimmune conditions.


Understanding Endometriosis


Endometriosis is a chronic gynecological disorder characterized by the presence of endometrial-like tissue growing outside the uterus. The cells resemble those lining the inner part of the uterus but differ markedly in multiple ways at the molecular level. The more we learn, the less certain the origins appear to be. They are likely partly genetic and partly influenced by multiple environmental factors acting on the body and genes.


The Immune System’s Role


Research suggests that abnormalities in the immune system may play a key role in the development of endometriosis. These abnormalities could prevent the immune system from effectively clearing ectopic endometrial cells, regardless of how they arrive there, allowing them to implant and grow outside the uterus. This hypothesis suggests that endometriosis might be, at least in part, an immunity-associated disorder.


Endometriosis is often accompanied by a chronic inflammatory response, triggered by the presence of ectopic endometrial-like cells. This inflammation, coupled with the immune system’s inability to effectively remove ectopic cells, could partly explain the chronic pain often associated with the condition.


Is Endometriosis an Autoimmune Disease?


Autoimmune diseases occur when the immune system mistakenly attacks the body’s own cells, treating them as foreign invaders. The link between endometriosis and autoimmune diseases is still being explored, and multiple studies suggest that women with endometriosis may have a higher risk for certain autoimmune conditions. It is not clear whether endometriosis carries a risk of developing autoimmune diseases, whether the reverse is true, or whether they simply share common molecular mechanisms that could result in both occurring in any given individual. At this point, it is important to stress that an association does not mean cause.


This review aims to delve into the current state of research on whether endometriosis is an autoimmune disease, presenting key findings from population-based studies, discussing potential implications, and highlighting areas for future research.


Systemic Lupus Erythematosus (SLE) and Endometriosis


Systemic Lupus Erythematosus (SLE) is an autoimmune disease characterized by inflammation and damage to various tissues, including the skin, joints, kidneys, and heart. Some studies suggest a positive association between endometriosis and SLE. One study reported a seven-fold increase in the odds of having SLE among women with endometriosis, though it relied on self-reported diagnoses, which may introduce bias. A more recent cohort study found a more modest but still significant elevation in SLE risk among women with endometriosis.


Sjögren’s Syndrome (SS) and Endometriosis


Sjögren’s Syndrome (SS) is an autoimmune disorder marked by dry eyes and mouth, often accompanied by other systemic symptoms. A meta-analysis of three case-control studies found a 76% higher odds of SS in women with endometriosis. These studies had small sample sizes and wide confidence intervals, indicating a need for further research. Confidence intervals describe the range around a measurement that indicates how accurate the conclusion might be; the tighter the range among measurements, the better.


Rheumatoid Arthritis (RA) and Endometriosis


Rheumatoid Arthritis (RA) is a chronic inflammatory disorder affecting many joints, including those in the hands and feet. Some research suggests a link between endometriosis and an increased risk of developing RA. One meta-analysis found a 50% increased risk of RA among women with endometriosis, but the studies included had limitations such as small sample sizes and wide confidence intervals.


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Autoimmune Thyroid Disorders (ATD) and Endometriosis


Autoimmune thyroid disorders (ATDs), including Graves’ disease and Hashimoto’s thyroiditis, arise when the immune system attacks the thyroid gland, leading to either overactivity (hyperthyroidism) or underactivity (hypothyroidism). A meta-analysis of three case-control studies suggested a non-significant increase in the odds of ATD in women with endometriosis. The studies showed high heterogeneity and low-quality scores, underscoring the need for further research.


Coeliac Disease (CLD) and Endometriosis


Coeliac disease (CLD) is an autoimmune disorder in which ingestion of gluten leads to damage in the small intestine. A meta-analysis of two case-control studies found a four-fold increase in the odds of CLD among women with endometriosis. As with several other findings, small sample sizes and wide confidence intervals point to the need for additional investigation.


Multiple Sclerosis (MS) and Endometriosis


Multiple Sclerosis (MS) is a chronic disease that attacks the central nervous system. Current research on the association between MS and endometriosis is limited and inconclusive, with some studies suggesting a possible link and others finding no significant association.


Inflammatory Bowel Disease (IBD) and Endometriosis


Inflammatory bowel disease (IBD), including Crohn’s disease and ulcerative colitis, is characterized by chronic inflammation of the gastrointestinal tract. One study reported a 50% increase in the risk of IBD among women with endometriosis, although the sample size was small and the confidence interval was wide, indicating a need for further research.


The Bigger Picture


While the evidence for an association between endometriosis and certain autoimmune diseases is compelling, correlation or association does not imply causation. Further research is needed to determine whether endometriosis actually increases the risk of developing autoimmune diseases or vice versa, or whether the two share common risk factors or underlying mechanisms. The potential link highlights the importance of a comprehensive approach to women’s health. For women with endometriosis, awareness of a possible increased risk of autoimmune diseases can inform healthcare decisions and monitoring.


Study Findings at a Glance

Condition

Study Type

Reported Association

Key Limitations

SLE

Case-control

Seven-fold increase in odds among women with endometriosis

Self-reported diagnoses may introduce bias

SLE

Cohort

Modest but significant elevation in risk

General study limitations not fully detailed

Sjögren’s Syndrome

Meta-analysis of 3 case-control studies

76% higher odds in women with endometriosis

Small sample sizes; wide confidence intervals

Rheumatoid Arthritis

Meta-analysis

50% increased risk in women with endometriosis

Small samples; wide confidence intervals

Autoimmune Thyroid Disorders

Meta-analysis of 3 case-control studies

Non-significant increase in odds

High heterogeneity; low-quality scores

Coeliac Disease

Meta-analysis of 2 case-control studies

Four-fold increase in odds

Small sample sizes; wide confidence intervals

Multiple Sclerosis

Mixed/limited studies

Limited and inconclusive; mixed findings

Insufficient data; inconsistent results

Inflammatory Bowel Disease

Single study

50% increase in risk in women with endometriosis

Small sample size; wide confidence interval


The Path Ahead


The intersection of endometriosis and autoimmune diseases is a complex and evolving field of research. Better understanding the relationship between these conditions could improve diagnosis, treatment, and ultimately, the quality of life for patients with endometriosis. Continued exploration of this connection is providing new insights into the pathophysiology of endometriosis and autoimmune diseases, potentially leading to novel treatments and preventive strategies.

Quick Answers

Why do I have painful urination and pelvic cramping between periods?

Painful urination with pelvic cramping between periods can happen when the bladder, ureters, uterus, pelvic floor, or nerves are being irritated—sometimes in a way that still follows a subtle cycle pattern even if you’re not actively bleeding. Endometriosis can contribute by affecting the bladder wall or tissues around the bladder and ureters, and symptoms don’t have to include visible blood in the urine. Importantly, urinary tract endometriosis isn’t always “obviously urinary,” and ureter involvement can be quiet while still significant, which is why we take these symptoms seriously.


These symptoms can also come from conditions that overlap with (or mimic) endometriosis, such as bladder pain syndrome/interstitial cystitis, pelvic floor overactivity, adenomyosis-related uterine cramping, or other pelvic pain drivers. In our evaluation process, we focus on your full flare pattern—what triggers it, how it relates to your cycle, and whether urine tests have been repeatedly negative—then use targeted exam and the right imaging (often expertly interpreted ultrasound and/or MRI) to map what’s actually going on.


If you’re noticing recurring burning with urination, pressure, cramping, or symptoms that predictably flare mid-cycle or before your period, that pattern is useful diagnostic information—not something to dismiss. You can explore our urinary symptom and diagnostic evaluation resources to see how we approach “UTI-like” symptoms with negative cultures, and you’re welcome to reach out to schedule a consultation so our team can help you sort out whether this is bladder/ureter endometriosis, a look-alike condition, or a combination.

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Why do I get low back and leg pain during my period?

Low back and leg pain that predictably flares with your period can happen when pelvic inflammation irritates pain pathways that “refer” into the back, hips, buttocks, and down the leg. In some patients, endometriosis can be part of that story—either indirectly (pelvic inflammation and scarring increasing pressure and sensitivity around nearby nerves) or more directly if disease is affecting areas close to major nerves.


When period-related leg pain resembles sciatica—deep buttock pain, tingling, burning, or pain radiating down the back of the thigh—it raises the possibility of endometriosis-related sciatic irritation or pelvic floor involvement (often described as piriformis-type pressure on the nerve). These symptoms may start before bleeding, peak during the period, and linger afterward, and in more significant cases can be associated with weakness or changes in walking.


Because back and leg pain can also come from the spine, hips, or muscles, the key is the pattern and the full symptom “constellation,” including pelvic pain, bowel/bladder symptoms, or pain with sex. Our team can help you sort out whether your pain fits an endometriosis/adenomyosis pattern and, if needed, plan next-step evaluation such as targeted imaging and a strategy focused on lasting relief rather than temporary suppression.

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Can endometriosis cause infertility and pelvic pain in your 20s?

Yes. Endometriosis can absolutely show up in your late 20s and it can be a driver of both chronic pelvic pain and fertility challenges. Pain can include severe or worsening period cramps, pain with sex, bowel or bladder pain, and “flare” patterns that track with your cycle—although symptom severity doesn’t always match how much disease is present.


Endometriosis can affect fertility in several ways, including adhesions that distort tubo‑ovarian anatomy, inflammation and immune signaling that interferes with fertilization or embryo development, and ovarian factors—especially when endometriomas are involved. For some patients, the uterine environment also matters, particularly when adenomyosis is present alongside endometriosis. In our practice, we focus on listening to your full symptom and fertility story and then building an evaluation that looks for endometriosis while also checking for common look‑alikes or coexisting issues, so we can tailor a plan to your goals—whether that’s pain relief, preserving fertility, or both.

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Why is my period pain so severe it disrupts my daily life?

Severe, life-disrupting period pain isn’t “normal cramps,” and it often points to an underlying driver that deserves a real explanation—not just symptom masking. One common cause is endometriosis, where tissue similar to the uterine lining grows outside the uterus and can irritate pelvic structures, trigger inflammatory chemicals, and sometimes involve organs like the bowel or bladder. Another key point is that pain severity doesn’t reliably match “stage,” so someone can have intense pain even if imaging looks normal or disease appears limited.


When period pain is severe, worsening over time, starts years after your first period, or comes with heavy bleeding, painful sex, bowel pain with periods, urinary pain, or fatigue, we think in patterns—because endometriosis and related conditions can overlap with pelvic floor dysfunction, nerve pain/central sensitization, GI dysbiosis, vascular issues, or adenomyosis. Our approach is to take your full timeline and flare pattern seriously and then tailor evaluation with careful exam and expertly interpreted imaging when helpful. If your pain is disrupting school, work, relationships, or daily functioning, reach out to schedule a consultation—our team can help you identify what’s driving it and map out a plan aimed at lasting relief.

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How rare is endosalpingiosis?

Endosalpingiosis is generally considered uncommon, but “how rare” it is depends heavily on who’s being studied and how it’s found. Many cases are discovered incidentally on pathology—meaning tissue is identified under the microscope after surgery done for other reasons—so it’s likely underrecognized in the general population. In other settings (like surgical cohorts), it may appear more often simply because more tissue is being sampled and examined carefully.


What matters most for patients is that endosalpingiosis can be confused with endometriosis on imaging or even at surgery, yet it doesn’t always behave the same way clinically. If you’ve been told you have endosalpingiosis and you also have pelvic pain, bowel/bladder symptoms, or fertility concerns, our team can help interpret what that finding means in the context of your symptoms and operative/pathology reports. You’re welcome to explore our educational content on related endometriosis and uterine conditions, and reach out to schedule a consultation if you want a personalized plan.

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Have a question?

Lotus Endometriosis Institute provides California-based surgical evaluation and advanced excision care for patients with suspected endometriosis, adenomyosis, complex pelvic pain, and related conditions.


Many patients contact us from outside California to learn whether traveling for in-person evaluation and possible surgery may be appropriate.

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